Medical Research Skills for Claude Code

Single entry point for the full bundle. Classifies your request and routes to the right skill — or chains multiple skills end-to-end via Full Pipeline Mode.

• ✓Automatic intent classification
• ✓End-to-end pipeline: skills chain automatically
• ✓Project context detection

PubMed + Semantic Scholar + bioRxiv search with anti-hallucination citation verification. Token-efficient error handling.

• ✓Every reference verified via API
• ✓BibTeX export
• ✓No fabricated citations

Batch open-access PDF downloader. Unpaywall → PMC → OpenAlex → CrossRef pipeline. OA-only — no paywall bypass.

• ✓DOI list or TSV input
• ✓PDF validation built-in
• ✓Manual-needed list for paywalled papers

Manuscript compliance audit against 15 reporting guidelines with item-by-item assessment and section boundary checks.

• ✓STROBE, STARD, PRISMA, CONSORT, TRIPOD+AI
• ✓Results/Discussion boundary check
• ✓Actionable fix suggestions

Identifies analysis unit, cohort logic, data leakage risks, and validation strategy.

• ✓Leakage risk detection
• ✓Comparator design review
• ✓Reporting guideline matching

Reproducible Python/R code for diagnostic accuracy, inter-rater agreement, and more. Calibration mandatory for prediction models.

• ✓DTA, survival, demographics tables
• ✓Publication-ready output
• ✓Effect sizes with CIs

Journal-spec figures: ROC curves, forest plots, flow diagrams, Kaplan-Meier, and more.

• ✓300 DPI, colorblind-safe
• ✓PRISMA / CONSORT / STARD flows
• ✓Bland-Altman, confusion matrices

Structures significance, innovation, approach, milestones, and consortium roles.

• ✓NIH / NRF format support
• ✓Specific aims page
• ✓Budget justification

Classifies new research projects, summarizes state, and recommends next steps.

• ✓Project type classification
• ✓Missing input detection
• ✓Lightweight scaffolding

Academic presentation prep: paper analysis, speaker scripts, slide note injection, Q&A.

• ✓Audience-adapted scripts
• ✓PPTX note injection utility
• ✓Multi-perspective Q&A prep

Convert personal Claude Code skills into distributable, open-source-ready packages.

• ✓Automated PII audit
• ✓License compatibility check
• ✓Generalization pipeline

Full 8-phase systematic review and meta-analysis pipeline. DTA (bivariate/HSROC) and intervention MA with PRISMA-DTA compliance.

• ✓Protocol to manuscript pipeline
• ✓Bivariate & HSROC models
• ✓PRISMA-DTA compliant

Full 8-phase IMRAD pipeline from outline to submission-ready manuscript with built-in critic-fixer loops and section boundary enforcement.

• ✓Anti-interpretation guardrails in Results
• ✓Interactive Discussion with anchor papers
• ✓AI writing pattern detection

Pre-submission check across 10 categories with research-type branching (AI, observational, educational, meta-analysis, case report, surgical).

• ✓Major / Minor severity classification
• ✓Calibration mandatory for prediction models
• ✓R0 numbering for /revise pipeline

Parses reviewer decision letters, classifies comments as MAJOR/MINOR/REBUTTAL, and generates point-by-point responses.

• ✓Structured response templates
• ✓Change log with page/line refs
• ✓Cover letter generation

Scaffold research projects, track writing progress, generate submission checklists and backwards timelines.

• ✓Project scaffolding (init)
• ✓Phase progress tracking
• ✓Pre-submission checklist

Power analysis and sample size estimation for diagnostic accuracy, group comparison, and correlation studies.

• ✓DTA (sensitivity/specificity) power
• ✓Two-group comparison (t-test, chi-square)
• ✓Reproducible R/Python code output

Standardize, validate, and transform raw research datasets. Handles missing data, outlier detection, and variable recoding.

• ✓Missing data summary & imputation
• ✓Outlier detection (IQR, Z-score)
• ✓Codebook generation

Match your manuscript to target journals by scope, impact factor, turnaround time, and open-access policy.

• ✓Scope & audience matching
• ✓Impact factor / CiteScore lookup
• ✓OA fee & turnaround estimates

Generate SPIRIT-compliant study protocols and PROSPERO registration drafts for systematic reviews.

• ✓SPIRIT checklist integration
• ✓PROSPERO registration draft
• ✓Ethics submission boilerplate